Variant report

Variant	rs13178531
Chromosome Location	chr5:36203579-36203580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36201394..36203892-chr5:36218112..36220521,2	K562	blood:
2	chr5:36200967..36203388-chr5:36203456..36205413,2	K562	blood:
3	chr5:36202913..36206774-chr5:36238619..36242174,4	K562	blood:
4	chr5:36200336..36201958-chr5:36203504..36205835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10454863	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10512640	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941278	0.81[EUR][1000 genomes]
rs10941285	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11744207	0.81[EUR][1000 genomes]
rs11948581	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11952882	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186384	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189205	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153581	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13154338	0.98[ASN][1000 genomes]
rs13154462	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160147	0.98[ASN][1000 genomes]
rs13162876	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163528	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166148	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13174281	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13174907	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179201	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13180677	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13185969	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902835	0.82[EUR][1000 genomes]
rs249272	0.80[EUR][1000 genomes]
rs3088073	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62356073	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6451261	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865319	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs732328	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7703895	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7705641	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7710062	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716788	0.80[EUR][1000 genomes]
rs7719357	0.85[EUR][1000 genomes]
rs7719686	0.86[EUR][1000 genomes]
rs7723157	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731023	0.86[ASN][1000 genomes]
rs7736943	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
2	chr5:36164800-36220800	Weak transcription	Gastric	stomach
3	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
5	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
9	chr5:36179200-36210400	Weak transcription	Fetal Kidney	kidney
10	chr5:36179200-36212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:36181400-36212800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:36182200-36214800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:36182800-36220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:36182800-36220600	Weak transcription	Brain Angular Gyrus	brain
15	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
16	chr5:36190200-36207400	Strong transcription	Dnd41	blood
17	chr5:36190200-36220800	Weak transcription	Esophagus	oesophagus
18	chr5:36190400-36220800	Weak transcription	Lung	lung
19	chr5:36190600-36211000	Weak transcription	Fetal Stomach	stomach
20	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
21	chr5:36190800-36206200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:36190800-36211000	Weak transcription	Fetal Intestine Small	intestine
23	chr5:36191800-36220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:36192000-36206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:36192000-36224200	Weak transcription	Aorta	Aorta
27	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:36193600-36220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:36193600-36220800	Weak transcription	Pancreas	Pancrea
30	chr5:36193800-36203800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:36194000-36207400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:36194200-36207800	Weak transcription	Stomach Mucosa	stomach
33	chr5:36195400-36205200	Strong transcription	Liver	Liver
34	chr5:36196600-36210000	Weak transcription	HSMMtube	muscle
35	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
36	chr5:36196800-36205200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:36197000-36212400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:36197800-36220800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr5:36197800-36224800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:36198200-36214800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:36199400-36203600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr5:36199400-36204400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr5:36199600-36207400	Strong transcription	Primary T cells from cord blood	blood
45	chr5:36199800-36203800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr5:36199800-36204600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:36199800-36205400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr5:36200000-36204200	Strong transcription	Adipose Nuclei	Adipose
49	chr5:36200000-36229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr5:36200200-36220800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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