Variant report

Variant	rs12186384
Chromosome Location	chr5:36220004-36220005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10454863	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10512639	0.80[EUR][1000 genomes]
rs10512640	1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941279	0.80[EUR][1000 genomes]
rs10941285	0.86[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11741164	0.82[JPT][hapmap]
rs11747546	0.80[EUR][1000 genomes]
rs11948581	1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11952882	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522905	0.81[EUR][1000 genomes]
rs13153581	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13154338	0.98[ASN][1000 genomes]
rs13154462	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160147	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13162876	0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163528	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166148	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13174281	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13174907	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178531	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179201	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13180677	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13185969	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392455	0.82[JPT][hapmap]
rs16902835	0.86[EUR][1000 genomes]
rs3088073	0.86[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35647151	0.80[EUR][1000 genomes]
rs4869475	0.83[EUR][1000 genomes]
rs62356073	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6451261	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67399512	0.80[EUR][1000 genomes]
rs6865319	0.95[ASN][1000 genomes]
rs6881318	0.81[EUR][1000 genomes]
rs732328	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7703895	0.86[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7705641	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7710062	0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719357	0.81[EUR][1000 genomes]
rs7719686	0.82[EUR][1000 genomes]
rs7723157	0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731023	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7736943	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36164800-36220800	Weak transcription	Gastric	stomach
2	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
4	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
8	chr5:36182800-36220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:36182800-36220600	Weak transcription	Brain Angular Gyrus	brain
10	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
11	chr5:36190200-36220800	Weak transcription	Esophagus	oesophagus
12	chr5:36190400-36220800	Weak transcription	Lung	lung
13	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
14	chr5:36191800-36220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:36192000-36224200	Weak transcription	Aorta	Aorta
17	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:36193600-36220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:36193600-36220800	Weak transcription	Pancreas	Pancrea
20	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
21	chr5:36197800-36220800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:36197800-36224800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:36200000-36229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr5:36200200-36220800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:36200200-36239400	Weak transcription	Fetal Brain Male	brain
27	chr5:36201200-36222000	Weak transcription	A549	lung
28	chr5:36201200-36230200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr5:36201400-36240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:36202800-36220800	Weak transcription	Right Ventricle	heart
31	chr5:36203000-36220600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:36203600-36220200	Strong transcription	Placenta	Placenta
33	chr5:36203800-36220800	Weak transcription	Brain Substantia Nigra	brain
34	chr5:36203800-36227000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:36204000-36222600	Weak transcription	Fetal Heart	heart
36	chr5:36204000-36227000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr5:36205200-36226800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:36205800-36221800	Weak transcription	Colon Smooth Muscle	Colon
39	chr5:36207200-36220400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:36207200-36220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:36209000-36222800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:36210400-36223000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:36210400-36223200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr5:36210600-36222000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr5:36210600-36222600	Weak transcription	NHLF	lung
46	chr5:36210600-36225000	Weak transcription	NHEK	skin
47	chr5:36210600-36225200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr5:36211400-36221600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:36211800-36220800	Weak transcription	Fetal Intestine Small	intestine
50	chr5:36212400-36226800	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links