Variant report

Variant	rs4869475
Chromosome Location	chr5:36273546-36273547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36272403..36275223-chr5:36277459..36279344,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10454863	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs10512639	0.88[CEU][hapmap]
rs10512640	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs10941278	0.87[CEU][hapmap]
rs10941279	0.87[CEU][hapmap]
rs10941281	0.87[CEU][hapmap]
rs10941285	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11739323	0.96[CEU][hapmap]
rs11745827	0.96[CEU][hapmap]
rs11948581	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12186384	0.83[EUR][1000 genomes]
rs12189205	0.82[EUR][1000 genomes]
rs12522905	0.88[CEU][hapmap]
rs13153581	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13154462	0.84[EUR][1000 genomes]
rs13162876	0.88[CEU][hapmap]
rs13163528	0.84[EUR][1000 genomes]
rs13166148	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13174907	0.92[CEU][hapmap]
rs13179201	0.84[EUR][1000 genomes]
rs13180677	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13185969	0.83[EUR][1000 genomes]
rs16902835	0.92[CEU][hapmap]
rs2362977	0.96[CEU][hapmap]
rs2362979	0.96[CEU][hapmap]
rs3088073	0.84[CEU][hapmap]
rs3761973	0.88[CEU][hapmap]
rs3789758	0.96[CEU][hapmap]
rs62356073	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6881318	0.88[CEU][hapmap]
rs6884331	0.96[CEU][hapmap]
rs6890702	0.96[CEU][hapmap]
rs732328	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7703895	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7705641	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7710062	0.96[CEU][hapmap]
rs7716788	0.83[CEU][hapmap]
rs7719357	0.84[CEU][hapmap]
rs7723157	0.92[CEU][hapmap]
rs7736943	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36251800-36274400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:36254000-36274400	Weak transcription	Aorta	Aorta
3	chr5:36261600-36277000	Weak transcription	Pancreas	Pancrea
4	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:36266600-36274400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
7	chr5:36269800-36275400	Enhancers	Liver	Liver
8	chr5:36271200-36276800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:36272600-36274000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:36273000-36275000	Enhancers	Fetal Lung	lung
12	chr5:36273400-36273600	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:36273400-36273600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr5:36273400-36274800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr5:36273400-36274800	Enhancers	Adipose Nuclei	Adipose

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