Variant report

Variant	rs13182067
Chromosome Location	chr5:178210412-178210413
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11249573	1.00[ASN][1000 genomes]
rs11737921	1.00[ASN][1000 genomes]
rs11955306	1.00[ASN][1000 genomes]
rs13167830	1.00[ASN][1000 genomes]
rs13185217	1.00[ASN][1000 genomes]
rs13186608	1.00[ASN][1000 genomes]
rs34397660	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35494943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889597	0.80[AFR][1000 genomes]
rs4701033	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4701066	1.00[ASN][1000 genomes]
rs59406591	1.00[ASN][1000 genomes]
rs60372900	1.00[ASN][1000 genomes]
rs7444923	1.00[ASN][1000 genomes]
rs9686220	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462573	chr5:178180299-178241495	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv600452	chr5:178180299-178241495	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178166600-178224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:178183400-178213200	Weak transcription	K562	blood
3	chr5:178206000-178212600	Weak transcription	A549	lung
4	chr5:178206400-178217600	Weak transcription	Gastric	stomach
5	chr5:178208200-178213200	Weak transcription	Esophagus	oesophagus
6	chr5:178210200-178210600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:178210200-178210600	Enhancers	Spleen	Spleen
8	chr5:178210200-178210800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:178210400-178210600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:178210400-178210600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:178210400-178210600	Genic enhancers	Fetal Kidney	kidney
12	chr5:178210400-178210600	Flanking Active TSS	Lung	lung
13	chr5:178210400-178210600	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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