Variant report
| Variant | rs13186418 |
|---|---|
| Chromosome Location | chr5:106607644-106607645 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:106601653..106604975-chr5:106606341..106610947,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10515370 | 1.00[ASN][1000 genomes] |
| rs10515372 | 1.00[ASN][1000 genomes] |
| rs11948860 | 1.00[ASN][1000 genomes] |
| rs13163748 | 1.00[ASN][1000 genomes] |
| rs13165897 | 1.00[ASN][1000 genomes] |
| rs13167605 | 1.00[ASN][1000 genomes] |
| rs13169680 | 1.00[ASN][1000 genomes] |
| rs13179809 | 1.00[ASN][1000 genomes] |
| rs13184636 | 1.00[ASN][1000 genomes] |
| rs13184643 | 1.00[ASN][1000 genomes] |
| rs13184806 | 1.00[ASN][1000 genomes] |
| rs17159641 | 1.00[ASN][1000 genomes] |
| rs17159727 | 1.00[ASN][1000 genomes] |
| rs17159745 | 1.00[ASN][1000 genomes] |
| rs17159751 | 1.00[ASN][1000 genomes] |
| rs17343335 | 1.00[ASN][1000 genomes] |
| rs17343762 | 1.00[ASN][1000 genomes] |
| rs17400404 | 1.00[ASN][1000 genomes] |
| rs17402238 | 1.00[ASN][1000 genomes] |
| rs17403350 | 1.00[ASN][1000 genomes] |
| rs1895462 | 1.00[ASN][1000 genomes] |
| rs35709847 | 1.00[ASN][1000 genomes] |
| rs35740714 | 1.00[ASN][1000 genomes] |
| rs35748495 | 1.00[ASN][1000 genomes] |
| rs35775035 | 1.00[ASN][1000 genomes] |
| rs55849939 | 1.00[ASN][1000 genomes] |
| rs56283997 | 1.00[ASN][1000 genomes] |
| rs60635486 | 1.00[ASN][1000 genomes] |
| rs66460437 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67504033 | 1.00[ASN][1000 genomes] |
| rs6897756 | 1.00[ASN][1000 genomes] |
| rs72784111 | 1.00[ASN][1000 genomes] |
| rs72784113 | 1.00[ASN][1000 genomes] |
| rs765075 | 1.00[ASN][1000 genomes] |
| rs7701101 | 1.00[ASN][1000 genomes] |
| rs7711216 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030118 | chr5:106006097-106847949 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv823170 | chr5:106326293-106673695 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034276 | chr5:106461538-106944163 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv537851 | chr5:106461538-106944163 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:106604400-106608400 | Weak transcription | HUVEC | blood vessel |
| 2 | chr5:106604600-106609800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr5:106606000-106608200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 4 | chr5:106606800-106610000 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
