Variant report

Variant	rs17400404
Chromosome Location	chr5:106591614-106591615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10515370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515372	1.00[ASN][1000 genomes]
rs11948860	1.00[ASN][1000 genomes]
rs13163748	1.00[ASN][1000 genomes]
rs13165897	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167605	1.00[ASN][1000 genomes]
rs13169680	1.00[ASN][1000 genomes]
rs13179809	1.00[ASN][1000 genomes]
rs13184636	1.00[ASN][1000 genomes]
rs13184643	1.00[ASN][1000 genomes]
rs13184806	1.00[ASN][1000 genomes]
rs13186418	1.00[ASN][1000 genomes]
rs17159641	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159727	1.00[ASN][1000 genomes]
rs17159745	1.00[ASN][1000 genomes]
rs17159751	1.00[ASN][1000 genomes]
rs17343335	1.00[ASN][1000 genomes]
rs17343762	1.00[ASN][1000 genomes]
rs17401032	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17402238	1.00[ASN][1000 genomes]
rs17403350	1.00[ASN][1000 genomes]
rs1895462	1.00[ASN][1000 genomes]
rs34319558	0.93[EUR][1000 genomes]
rs35709847	1.00[ASN][1000 genomes]
rs35740714	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35748495	1.00[ASN][1000 genomes]
rs35775035	1.00[ASN][1000 genomes]
rs36179586	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55849939	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56283997	1.00[ASN][1000 genomes]
rs60635486	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66460437	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67504033	1.00[ASN][1000 genomes]
rs6897756	1.00[ASN][1000 genomes]
rs72784111	1.00[ASN][1000 genomes]
rs72784113	1.00[ASN][1000 genomes]
rs765075	1.00[ASN][1000 genomes]
rs7701101	1.00[ASN][1000 genomes]
rs7711216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106590400-106593800	Weak transcription	Osteobl	bone
2	chr5:106590400-106601200	Weak transcription	Aorta	Aorta
3	chr5:106590600-106593400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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