Variant report

Variant	rs34319558
Chromosome Location	chr5:106593515-106593516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10051555	0.83[ASN][1000 genomes]
rs10052065	0.83[ASN][1000 genomes]
rs10058308	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065742	0.83[ASN][1000 genomes]
rs10077480	0.83[ASN][1000 genomes]
rs10077806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515369	0.92[ASN][1000 genomes]
rs10515370	0.93[EUR][1000 genomes]
rs10515372	0.83[EUR][1000 genomes]
rs11951446	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13163748	0.83[EUR][1000 genomes]
rs13165897	0.92[EUR][1000 genomes]
rs13167605	0.83[EUR][1000 genomes]
rs13169680	0.83[EUR][1000 genomes]
rs13179809	0.83[EUR][1000 genomes]
rs13179824	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182806	0.92[ASN][1000 genomes]
rs13184643	0.83[EUR][1000 genomes]
rs13356705	0.83[ASN][1000 genomes]
rs13361441	0.83[ASN][1000 genomes]
rs1363312	0.92[ASN][1000 genomes]
rs17159621	0.92[ASN][1000 genomes]
rs17159641	0.94[EUR][1000 genomes]
rs17159693	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400404	0.93[EUR][1000 genomes]
rs17401032	0.92[EUR][1000 genomes]
rs28458419	0.83[ASN][1000 genomes]
rs28665692	0.83[ASN][1000 genomes]
rs34887030	0.92[ASN][1000 genomes]
rs35307227	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35709847	0.83[EUR][1000 genomes]
rs35740714	0.90[EUR][1000 genomes]
rs35775035	0.83[EUR][1000 genomes]
rs36179586	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55849939	0.92[EUR][1000 genomes]
rs56852743	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635486	0.88[EUR][1000 genomes]
rs6596736	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66460437	0.92[EUR][1000 genomes]
rs6897756	0.83[EUR][1000 genomes]
rs73212446	0.92[ASN][1000 genomes]
rs73777824	0.83[ASN][1000 genomes]
rs765075	0.83[EUR][1000 genomes]
rs7713055	0.92[ASN][1000 genomes]
rs7713807	0.83[ASN][1000 genomes]
rs7730864	0.83[ASN][1000 genomes]
rs7735115	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9327996	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327997	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106590400-106593800	Weak transcription	Osteobl	bone
2	chr5:106590400-106601200	Weak transcription	Aorta	Aorta
3	chr5:106593400-106594000	Enhancers	A549	lung
4	chr5:106593400-106594400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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