Variant report

Variant	rs13361441
Chromosome Location	chr5:106670008-106670009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10051555	1.00[ASN][1000 genomes]
rs10052065	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10058308	0.83[ASN][1000 genomes]
rs10062445	0.83[ASN][1000 genomes]
rs10065742	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10077480	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10077806	0.83[ASN][1000 genomes]
rs10491394	1.00[CHB][hapmap]
rs13179824	0.83[ASN][1000 genomes]
rs13356705	1.00[ASN][1000 genomes]
rs153100	1.00[CHB][hapmap]
rs17159693	0.83[ASN][1000 genomes]
rs17159868	1.00[CHB][hapmap]
rs17412225	1.00[CHB][hapmap]
rs17534228	1.00[CHB][hapmap]
rs17534235	1.00[CHB][hapmap]
rs28458419	1.00[ASN][1000 genomes]
rs28665692	1.00[ASN][1000 genomes]
rs28818231	0.81[ASN][1000 genomes]
rs34319558	0.83[ASN][1000 genomes]
rs35307227	0.83[ASN][1000 genomes]
rs36179586	0.83[ASN][1000 genomes]
rs41464645	1.00[CHB][hapmap]
rs56852743	0.83[ASN][1000 genomes]
rs57801723	0.91[ASN][1000 genomes]
rs6596736	0.83[ASN][1000 genomes]
rs6894788	1.00[CHB][hapmap]
rs73212446	0.91[ASN][1000 genomes]
rs73777824	1.00[ASN][1000 genomes]
rs7710322	0.91[AFR][1000 genomes]
rs7713055	0.91[ASN][1000 genomes]
rs7713807	1.00[ASN][1000 genomes]
rs7730864	1.00[ASN][1000 genomes]
rs9327996	0.83[ASN][1000 genomes]
rs9327997	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106667800-106672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:106667800-106672400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:106668400-106672400	Weak transcription	NHEK	skin
4	chr5:106668800-106672200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:106668800-106672800	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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