Variant report

Variant	rs7713807
Chromosome Location	chr5:106679208-106679209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10051555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052065	1.00[ASN][1000 genomes]
rs10058308	0.83[ASN][1000 genomes]
rs10062445	0.83[ASN][1000 genomes]
rs10065742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077806	0.83[ASN][1000 genomes]
rs10491389	1.00[MEX][hapmap]
rs10491394	1.00[CHB][hapmap]
rs13179824	0.83[ASN][1000 genomes]
rs13356705	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361441	1.00[ASN][1000 genomes]
rs153100	1.00[CHB][hapmap]
rs17159693	0.83[ASN][1000 genomes]
rs17159868	1.00[CHB][hapmap]
rs17159988	1.00[MEX][hapmap]
rs17412225	1.00[CHB][hapmap]
rs17534228	1.00[CHB][hapmap]
rs17534235	1.00[CHB][hapmap]
rs28458419	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28665692	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28818231	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34319558	0.83[ASN][1000 genomes]
rs35307227	0.83[ASN][1000 genomes]
rs36179586	0.83[ASN][1000 genomes]
rs41464645	1.00[CHB][hapmap]
rs56852743	0.83[ASN][1000 genomes]
rs57801723	0.91[ASN][1000 genomes]
rs6596736	0.83[ASN][1000 genomes]
rs6894788	1.00[CHB][hapmap]
rs73212446	0.91[ASN][1000 genomes]
rs73777824	1.00[ASN][1000 genomes]
rs7705311	1.00[TSI][hapmap]
rs7713055	0.91[ASN][1000 genomes]
rs7729948	1.00[MEX][hapmap]
rs7730864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327996	0.83[ASN][1000 genomes]
rs9327997	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106675200-106683400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:106678800-106680600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:106679200-106680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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