Variant report

Variant	rs17159868
Chromosome Location	chr5:106720912-106720913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106715700..106717698-chr5:106719319..106721720,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10491394	1.00[CHB][hapmap]
rs11957904	1.00[CEU][hapmap]
rs12109193	1.00[CEU][hapmap]
rs153100	1.00[CHB][hapmap]
rs17159888	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17412225	1.00[CHB][hapmap]
rs17534228	1.00[CHB][hapmap]
rs17534235	1.00[CHB][hapmap]
rs3756542	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs41464645	1.00[CHB][hapmap]
rs61483329	0.89[EUR][1000 genomes]
rs6894788	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17159868	CRHBP	trans	brain	seeQTL

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106704600-106722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:106708800-106724800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:106711400-106723600	Weak transcription	Fetal Kidney	kidney
4	chr5:106713000-106722800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:106713000-106723200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:106713800-106724000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:106714200-106723200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106714200-106723400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:106714400-106721600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:106714400-106723400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:106715000-106725000	Weak transcription	Esophagus	oesophagus
12	chr5:106716000-106721600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:106716000-106722400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:106716000-106723000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:106716600-106722800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:106716800-106723000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:106717200-106722200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:106717200-106723200	Weak transcription	Fetal Lung	lung
19	chr5:106717400-106721400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:106717400-106723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:106717600-106722600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:106717600-106722600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:106717600-106723000	Weak transcription	Fetal Intestine Small	intestine
24	chr5:106717600-106723200	Weak transcription	Right Ventricle	heart
25	chr5:106717600-106723200	Weak transcription	NHLF	lung
26	chr5:106717600-106723600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:106717600-106723600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:106717600-106723800	Weak transcription	Fetal Stomach	stomach
29	chr5:106717600-106724800	Weak transcription	Placenta	Placenta
30	chr5:106717600-106724800	Weak transcription	Psoas Muscle	Psoas
31	chr5:106717800-106722600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr5:106717800-106722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr5:106717800-106722600	Weak transcription	NHDF-Ad	bronchial
34	chr5:106717800-106722800	Weak transcription	Fetal Heart	heart
35	chr5:106717800-106722800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr5:106717800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:106717800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:106718200-106722000	Weak transcription	HSMMtube	muscle
39	chr5:106718200-106723200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:106718400-106722000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:106718400-106722600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr5:106718400-106724800	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:106718400-106725000	Weak transcription	Left Ventricle	heart
44	chr5:106718600-106722000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:106718600-106722600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr5:106718600-106723200	Weak transcription	Fetal Thymus	thymus
47	chr5:106718600-106723200	Weak transcription	Thymus	Thymus
48	chr5:106718600-106723600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr5:106718800-106723200	Weak transcription	Dnd41	blood
50	chr5:106719000-106721400	Weak transcription	HSMM	muscle

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