Variant report

Variant	rs3756542
Chromosome Location	chr5:106722494-106722495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17159868	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106704600-106722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:106708800-106724800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:106711400-106723600	Weak transcription	Fetal Kidney	kidney
4	chr5:106713000-106722800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:106713000-106723200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:106713800-106724000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:106714200-106723200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106714200-106723400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:106714400-106723400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:106715000-106725000	Weak transcription	Esophagus	oesophagus
11	chr5:106716000-106723000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:106716600-106722800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:106716800-106723000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:106717200-106723200	Weak transcription	Fetal Lung	lung
15	chr5:106717400-106723000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:106717600-106722600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:106717600-106722600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:106717600-106723000	Weak transcription	Fetal Intestine Small	intestine
19	chr5:106717600-106723200	Weak transcription	Right Ventricle	heart
20	chr5:106717600-106723200	Weak transcription	NHLF	lung
21	chr5:106717600-106723600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:106717600-106723600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr5:106717600-106723800	Weak transcription	Fetal Stomach	stomach
24	chr5:106717600-106724800	Weak transcription	Placenta	Placenta
25	chr5:106717600-106724800	Weak transcription	Psoas Muscle	Psoas
26	chr5:106717800-106722600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr5:106717800-106722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:106717800-106722600	Weak transcription	NHDF-Ad	bronchial
29	chr5:106717800-106722800	Weak transcription	Fetal Heart	heart
30	chr5:106717800-106722800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:106717800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:106717800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:106718200-106723200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:106718400-106722600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr5:106718400-106724800	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:106718400-106725000	Weak transcription	Left Ventricle	heart
37	chr5:106718600-106722600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:106718600-106723200	Weak transcription	Fetal Thymus	thymus
39	chr5:106718600-106723200	Weak transcription	Thymus	Thymus
40	chr5:106718600-106723600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:106718800-106723200	Weak transcription	Dnd41	blood
42	chr5:106719600-106723200	Weak transcription	NHEK	skin
43	chr5:106719800-106722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:106720200-106722600	Weak transcription	HMEC	breast
45	chr5:106720200-106722800	Weak transcription	Hela-S3	cervix
46	chr5:106720400-106740800	Weak transcription	Aorta	Aorta
47	chr5:106721400-106723200	Enhancers	HSMM	muscle
48	chr5:106721600-106725400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr5:106722000-106723000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:106722000-106724800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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