Variant report

Variant	rs73212446
Chromosome Location	chr5:106626127-106626128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10051555	0.91[ASN][1000 genomes]
rs10052065	0.91[ASN][1000 genomes]
rs10058308	0.92[ASN][1000 genomes]
rs10062445	0.92[ASN][1000 genomes]
rs10065742	0.91[ASN][1000 genomes]
rs10077480	0.91[ASN][1000 genomes]
rs10077806	0.92[ASN][1000 genomes]
rs10515369	0.84[ASN][1000 genomes]
rs11951446	0.84[ASN][1000 genomes]
rs13179824	0.92[ASN][1000 genomes]
rs13182806	0.84[ASN][1000 genomes]
rs13356705	0.91[ASN][1000 genomes]
rs13361441	0.91[ASN][1000 genomes]
rs1363312	0.84[ASN][1000 genomes]
rs17159621	0.84[ASN][1000 genomes]
rs17159693	0.92[ASN][1000 genomes]
rs28458419	0.91[ASN][1000 genomes]
rs28665692	0.91[ASN][1000 genomes]
rs34319558	0.92[ASN][1000 genomes]
rs34887030	0.84[ASN][1000 genomes]
rs35307227	0.92[ASN][1000 genomes]
rs36179586	0.92[ASN][1000 genomes]
rs56852743	0.92[ASN][1000 genomes]
rs57801723	0.82[ASN][1000 genomes]
rs6596736	0.92[ASN][1000 genomes]
rs73777824	0.91[ASN][1000 genomes]
rs7713055	1.00[ASN][1000 genomes]
rs7713807	0.91[ASN][1000 genomes]
rs7730864	0.91[ASN][1000 genomes]
rs7735115	0.84[ASN][1000 genomes]
rs9327996	0.92[ASN][1000 genomes]
rs9327997	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106621600-106626600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:106621800-106636600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:106623400-106626200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:106625000-106627200	Enhancers	Stomach Mucosa	stomach
5	chr5:106625400-106626200	Enhancers	GM12878-XiMat	blood
6	chr5:106625600-106626200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:106625600-106626200	Enhancers	Esophagus	oesophagus
8	chr5:106625600-106626600	Enhancers	Small Intestine	intestine
9	chr5:106625800-106626600	Enhancers	Fetal Heart	heart
10	chr5:106625800-106627200	Enhancers	Fetal Intestine Small	intestine
11	chr5:106625800-106629600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:106626000-106626600	Enhancers	HUVEC	blood vessel
13	chr5:106626000-106627200	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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