Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10051555	0.83[ASN][1000 genomes]
rs10052065	0.83[ASN][1000 genomes]
rs10058308	1.00[ASN][1000 genomes]
rs10062445	1.00[ASN][1000 genomes]
rs10065742	0.83[ASN][1000 genomes]
rs10077480	0.83[ASN][1000 genomes]
rs10077806	1.00[ASN][1000 genomes]
rs10515369	0.92[ASN][1000 genomes]
rs10515370	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11951446	0.92[ASN][1000 genomes]
rs13165897	0.82[EUR][1000 genomes]
rs13179824	1.00[ASN][1000 genomes]
rs13182806	0.92[ASN][1000 genomes]
rs13356705	0.83[ASN][1000 genomes]
rs13361441	0.83[ASN][1000 genomes]
rs1363312	0.92[ASN][1000 genomes]
rs17159621	0.92[ASN][1000 genomes]
rs17159641	0.85[EUR][1000 genomes]
rs17159693	1.00[ASN][1000 genomes]
rs17400404	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17401032	0.82[EUR][1000 genomes]
rs28458419	0.83[ASN][1000 genomes]
rs28665692	0.83[ASN][1000 genomes]
rs34319558	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34887030	0.92[ASN][1000 genomes]
rs35307227	1.00[ASN][1000 genomes]
rs35740714	0.81[EUR][1000 genomes]
rs55849939	0.82[EUR][1000 genomes]
rs56852743	1.00[ASN][1000 genomes]
rs60635486	0.84[EUR][1000 genomes]
rs6596736	1.00[ASN][1000 genomes]
rs66460437	0.82[EUR][1000 genomes]
rs73212446	0.92[ASN][1000 genomes]
rs73777824	0.83[ASN][1000 genomes]
rs7713055	0.92[ASN][1000 genomes]
rs7713807	0.83[ASN][1000 genomes]
rs7730864	0.83[ASN][1000 genomes]
rs7735115	0.92[ASN][1000 genomes]
rs9327996	1.00[ASN][1000 genomes]
rs9327997	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106578600-106583200	Weak transcription	Psoas Muscle	Psoas
2	chr5:106579000-106588800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:106579200-106583200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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