Variant report

Variant	rs17401032
Chromosome Location	chr5:106607177-106607178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106601653..106604975-chr5:106606341..106610947,4	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10058308	0.91[EUR][1000 genomes]
rs10062445	0.91[EUR][1000 genomes]
rs10077806	0.91[EUR][1000 genomes]
rs10515370	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10515372	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13163748	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13165897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13167605	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13169680	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13179809	0.91[EUR][1000 genomes]
rs13179824	0.91[EUR][1000 genomes]
rs13184636	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13184643	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17159641	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17159693	0.89[EUR][1000 genomes]
rs17343762	0.83[EUR][1000 genomes]
rs17400404	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34319558	0.92[EUR][1000 genomes]
rs35307227	0.91[EUR][1000 genomes]
rs35709847	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35740714	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35748495	0.81[AMR][1000 genomes]
rs35775035	0.91[EUR][1000 genomes]
rs36179586	0.82[EUR][1000 genomes]
rs55849939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56852743	0.91[EUR][1000 genomes]
rs60635486	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6596736	0.91[EUR][1000 genomes]
rs66460437	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897756	0.91[EUR][1000 genomes]
rs765075	0.91[EUR][1000 genomes]
rs7735115	0.90[EUR][1000 genomes]
rs9327996	0.91[EUR][1000 genomes]
rs9327997	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106604400-106608400	Weak transcription	HUVEC	blood vessel
2	chr5:106604600-106609800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:106606000-106607400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:106606000-106608200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:106606400-106607400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:106606800-106610000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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