Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10051555	1.00[ASN][1000 genomes]
rs10058308	0.83[ASN][1000 genomes]
rs10062445	0.83[ASN][1000 genomes]
rs10065742	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10077480	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10077806	0.83[ASN][1000 genomes]
rs10491394	1.00[CHB][hapmap]
rs13179824	0.83[ASN][1000 genomes]
rs13356705	1.00[ASN][1000 genomes]
rs13361441	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs153100	1.00[CHB][hapmap]
rs17159693	0.83[ASN][1000 genomes]
rs17159868	1.00[CHB][hapmap]
rs17412225	1.00[CHB][hapmap]
rs17534228	1.00[CHB][hapmap]
rs17534235	1.00[CHB][hapmap]
rs28458419	1.00[ASN][1000 genomes]
rs28665692	1.00[ASN][1000 genomes]
rs28818231	0.81[ASN][1000 genomes]
rs34319558	0.83[ASN][1000 genomes]
rs35307227	0.83[ASN][1000 genomes]
rs36179586	0.83[ASN][1000 genomes]
rs41464645	1.00[CHB][hapmap]
rs56852743	0.83[ASN][1000 genomes]
rs57801723	0.91[ASN][1000 genomes]
rs6596736	0.83[ASN][1000 genomes]
rs6894788	1.00[CHB][hapmap]
rs73212446	0.91[ASN][1000 genomes]
rs73777824	1.00[ASN][1000 genomes]
rs7710322	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7713055	0.91[ASN][1000 genomes]
rs7713807	1.00[ASN][1000 genomes]
rs7730864	1.00[ASN][1000 genomes]
rs9327996	0.83[ASN][1000 genomes]
rs9327997	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106675200-106683400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:106676200-106678800	Enhancers	NHEK	skin
3	chr5:106676200-106679200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:106676800-106678400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:106677200-106678200	Weak transcription	HMEC	breast
6	chr5:106677800-106678600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:106677800-106678600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:106677800-106679200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:106678000-106678600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:106678000-106678600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:106678000-106678800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:106678000-106678800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:106678000-106679000	Enhancers	Fetal Heart	heart

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