Variant report
| Variant | rs10077480 |
|---|---|
| Chromosome Location | chr5:106679394-106679395 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10051555 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10052065 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10058308 | 0.83[ASN][1000 genomes] |
| rs10062445 | 0.83[ASN][1000 genomes] |
| rs10065742 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10077806 | 0.83[ASN][1000 genomes] |
| rs10491394 | 1.00[CHB][hapmap] |
| rs13179824 | 0.83[ASN][1000 genomes] |
| rs13356705 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13361441 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs153100 | 1.00[CHB][hapmap] |
| rs17159693 | 0.83[ASN][1000 genomes] |
| rs17159868 | 1.00[CHB][hapmap] |
| rs17412225 | 1.00[CHB][hapmap] |
| rs17534228 | 1.00[CHB][hapmap] |
| rs17534235 | 1.00[CHB][hapmap] |
| rs28458419 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28665692 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28818231 | 0.81[ASN][1000 genomes] |
| rs34319558 | 0.83[ASN][1000 genomes] |
| rs35307227 | 0.83[ASN][1000 genomes] |
| rs36179586 | 0.83[ASN][1000 genomes] |
| rs41464645 | 1.00[CHB][hapmap] |
| rs56852743 | 0.83[ASN][1000 genomes] |
| rs57801723 | 0.91[ASN][1000 genomes] |
| rs6596736 | 0.83[ASN][1000 genomes] |
| rs6894788 | 1.00[CHB][hapmap] |
| rs73212446 | 0.91[ASN][1000 genomes] |
| rs73777824 | 1.00[ASN][1000 genomes] |
| rs7710322 | 0.85[AFR][1000 genomes] |
| rs7713055 | 0.91[ASN][1000 genomes] |
| rs7713807 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7730864 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9327996 | 0.83[ASN][1000 genomes] |
| rs9327997 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030118 | chr5:106006097-106847949 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034276 | chr5:106461538-106944163 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv537851 | chr5:106461538-106944163 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:106675200-106683400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr5:106678800-106680600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 3 | chr5:106679200-106680200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
