Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10051555	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052065	1.00[ASN][1000 genomes]
rs10058308	0.83[ASN][1000 genomes]
rs10062445	0.83[ASN][1000 genomes]
rs10065742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077806	0.83[ASN][1000 genomes]
rs13179824	0.83[ASN][1000 genomes]
rs13356705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361441	1.00[ASN][1000 genomes]
rs17159693	0.83[ASN][1000 genomes]
rs28665692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28818231	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34319558	0.83[ASN][1000 genomes]
rs35307227	0.83[ASN][1000 genomes]
rs36179586	0.83[ASN][1000 genomes]
rs56852743	0.83[ASN][1000 genomes]
rs57801723	0.91[ASN][1000 genomes]
rs6596736	0.83[ASN][1000 genomes]
rs73212446	0.91[ASN][1000 genomes]
rs73777824	1.00[ASN][1000 genomes]
rs7713055	0.91[ASN][1000 genomes]
rs7713807	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730864	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327996	0.83[ASN][1000 genomes]
rs9327997	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106671600-106673600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:106672200-106674800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:106672200-106675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:106672400-106673200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:106672400-106674400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:106672400-106674400	Enhancers	NHEK	skin
7	chr5:106672600-106673400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106672600-106673400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:106672800-106673200	Enhancers	A549	lung
10	chr5:106672800-106674200	Enhancers	HMEC	breast
11	chr5:106673000-106673200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:106673000-106674600	Weak transcription	Placenta Amnion	Placenta Amnion

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