Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10058308	0.92[ASN][1000 genomes]
rs10062445	0.92[ASN][1000 genomes]
rs10077806	0.92[ASN][1000 genomes]
rs10515369	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951446	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179824	0.92[ASN][1000 genomes]
rs13182806	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363312	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159693	0.92[ASN][1000 genomes]
rs17159868	1.00[CHB][hapmap]
rs17412225	1.00[CHB][hapmap]
rs34319558	0.92[ASN][1000 genomes]
rs34887030	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35307227	0.92[ASN][1000 genomes]
rs36179586	0.92[ASN][1000 genomes]
rs56852743	0.92[ASN][1000 genomes]
rs6596736	0.92[ASN][1000 genomes]
rs73212446	0.84[ASN][1000 genomes]
rs7713055	0.84[ASN][1000 genomes]
rs7735115	0.85[ASN][1000 genomes]
rs929765	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9327996	0.92[ASN][1000 genomes]
rs9327997	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106586200-106590600	Enhancers	Fetal Lung	lung
2	chr5:106586800-106590200	Weak transcription	Fetal Kidney	kidney
3	chr5:106587200-106591000	Enhancers	Fetal Stomach	stomach
4	chr5:106588400-106590400	Enhancers	Osteobl	bone
5	chr5:106588400-106591200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:106588800-106590400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:106589000-106589800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:106589000-106590000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:106589000-106590200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr5:106589000-106590400	Enhancers	Aorta	Aorta
11	chr5:106589000-106590400	Enhancers	Colon Smooth Muscle	Colon
12	chr5:106589000-106590400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:106589000-106590600	Enhancers	HSMMtube	muscle
14	chr5:106589000-106591000	Enhancers	Fetal Muscle Leg	muscle
15	chr5:106589200-106590000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:106589200-106590400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:106589200-106590600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:106589200-106590600	Enhancers	Fetal Heart	heart
19	chr5:106589600-106589800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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