Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11241279	0.80[ASN][1000 genomes]
rs11241281	0.82[ASN][1000 genomes]
rs11745974	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs12153735	1.00[JPT][hapmap]
rs12187240	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs12516617	0.89[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs12516818	0.85[CHB][hapmap]
rs13168840	0.80[ASN][1000 genomes]
rs13188819	0.82[ASN][1000 genomes]
rs1364934	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1380477	0.82[CHB][hapmap]
rs1380478	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1459780	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459781	0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs17136633	0.85[CHB][hapmap]
rs1895776	0.81[ASN][1000 genomes]
rs34333534	0.90[ASN][1000 genomes]
rs34565875	0.82[ASN][1000 genomes]
rs36083903	0.90[ASN][1000 genomes]
rs4705505	0.80[CHB][hapmap]
rs6884289	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs72801872	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830452	chr5:113798617-113975228	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13188074	TSSK1B	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113793600-113812800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:113793800-113812800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113794200-113808600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:113794200-113813400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:113797000-113809800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:113797600-113801800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:113799600-113803400	Weak transcription	Pancreas	Pancrea
8	chr5:113799800-113801800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:113800200-113813600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:113800400-113803000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:113800400-113807600	Weak transcription	Liver	Liver
12	chr5:113800400-113811000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:113801000-113807400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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