Variant report

Variant	rs4705505
Chromosome Location	chr5:113797914-113797915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11745974	0.84[JPT][hapmap]
rs12153101	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12516617	0.80[CHB][hapmap]
rs12516818	0.95[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs13188074	0.80[CHB][hapmap]
rs13357700	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1364934	0.84[CHB][hapmap]
rs1380477	0.84[CHB][hapmap]
rs1459780	0.85[CHB][hapmap]
rs1459781	0.85[CHB][hapmap]
rs17136633	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1993657	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2900085	0.84[JPT][hapmap]
rs4435855	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6884289	0.83[CHB][hapmap]
rs7706228	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113793400-113798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:113793600-113799400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113793600-113799400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:113793600-113812800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:113793800-113812800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:113794200-113808600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:113794200-113813400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:113794600-113799400	Weak transcription	Liver	Liver
9	chr5:113794800-113798800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:113796600-113798200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:113797000-113809800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:113797400-113801000	Weak transcription	Brain Anterior Caudate	brain
13	chr5:113797600-113801800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links