Variant report

Variant	rs13188572
Chromosome Location	chr5:178259132-178259133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178228775..178231759-chr5:178257850..178260513,2	MCF-7	breast:
2	chr5:178258610..178261483-chr5:178285999..178288925,2	K562	blood:

Variant related genes	Relation type
ENSG00000178338	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10036005	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10059914	0.88[ASN][1000 genomes]
rs10903234	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11249579	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11249594	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11249595	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11249596	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12515217	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12515789	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12653675	0.88[ASN][1000 genomes]
rs12659865	0.85[ASN][1000 genomes]
rs12659899	0.87[ASN][1000 genomes]
rs13168177	0.87[ASN][1000 genomes]
rs13171491	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13176136	0.86[ASN][1000 genomes]
rs13185058	0.87[ASN][1000 genomes]
rs13185213	0.87[ASN][1000 genomes]
rs13185345	0.87[ASN][1000 genomes]
rs13186348	0.87[ASN][1000 genomes]
rs28516575	0.88[ASN][1000 genomes]
rs28666448	0.88[ASN][1000 genomes]
rs35000987	0.86[ASN][1000 genomes]
rs35120582	0.84[ASN][1000 genomes]
rs35572924	0.86[ASN][1000 genomes]
rs4073864	0.89[ASN][1000 genomes]
rs4700796	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4701141	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4701142	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6422327	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6600958	0.81[AMR][1000 genomes]
rs6600959	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6600965	0.86[ASN][1000 genomes]
rs6600966	0.87[ASN][1000 genomes]
rs6600968	0.87[ASN][1000 genomes]
rs6600969	0.87[ASN][1000 genomes]
rs6600970	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6600971	0.86[ASN][1000 genomes]
rs6600972	0.87[ASN][1000 genomes]
rs6600973	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6600974	0.88[ASN][1000 genomes]
rs6600975	0.88[ASN][1000 genomes]
rs6600976	0.88[ASN][1000 genomes]
rs6600977	0.88[ASN][1000 genomes]
rs6600978	0.87[ASN][1000 genomes]
rs6600979	0.89[ASN][1000 genomes]
rs6861417	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6867380	0.86[ASN][1000 genomes]
rs6869597	0.87[ASN][1000 genomes]
rs6871640	0.87[ASN][1000 genomes]
rs6874069	0.91[ASN][1000 genomes]
rs6879858	0.86[ASN][1000 genomes]
rs6880309	0.87[ASN][1000 genomes]
rs6884341	0.81[ASN][1000 genomes]
rs6885551	0.88[ASN][1000 genomes]
rs6887669	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6888125	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6889638	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6892280	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6897032	0.87[ASN][1000 genomes]
rs7447735	0.84[ASN][1000 genomes]
rs7701596	0.86[ASN][1000 genomes]
rs7703952	0.86[ASN][1000 genomes]
rs7709956	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7713731	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7716645	0.87[ASN][1000 genomes]
rs7716807	0.87[ASN][1000 genomes]
rs7718276	0.86[ASN][1000 genomes]
rs7720135	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7720550	0.87[ASN][1000 genomes]
rs7722370	0.86[ASN][1000 genomes]
rs7726476	0.88[ASN][1000 genomes]
rs7735410	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv600453	chr5:178252366-178259787	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv600454	chr5:178257859-178259891	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv12110	chr5:178258606-178260382	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv820511	chr5:178258606-178260382	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv18838	chr5:178258606-178266167	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3519080	chr5:178258707-178259283	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3519081	chr5:178258707-178259283	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv600455	chr5:178258728-178259891	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv600456	chr5:178259058-178259891	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178254000-178259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:178254200-178259400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:178257200-178259200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:178257200-178259400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:178257600-178259400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:178258200-178259800	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr5:178258200-178260000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr5:178258600-178259800	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr5:178258800-178260000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr5:178258800-178260000	Active TSS	K562	blood

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