Variant report

Variant	rs6600958
Chromosome Location	chr5:178228078-178228079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10036005	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10059914	0.81[ASN][1000 genomes]
rs11249579	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12653675	0.81[ASN][1000 genomes]
rs12659865	0.84[ASN][1000 genomes]
rs12659899	0.86[ASN][1000 genomes]
rs13168177	0.84[ASN][1000 genomes]
rs13176136	0.84[ASN][1000 genomes]
rs13185058	0.84[ASN][1000 genomes]
rs13185213	0.84[ASN][1000 genomes]
rs13185345	0.84[ASN][1000 genomes]
rs13186348	0.84[ASN][1000 genomes]
rs13188572	0.81[AMR][1000 genomes]
rs28516575	0.83[ASN][1000 genomes]
rs28666448	0.83[ASN][1000 genomes]
rs35000987	0.81[ASN][1000 genomes]
rs35572924	0.81[ASN][1000 genomes]
rs4073864	0.84[ASN][1000 genomes]
rs4700796	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4701078	0.85[ASN][1000 genomes]
rs4701142	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6422327	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6600959	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6600962	0.80[ASN][1000 genomes]
rs6600965	0.87[ASN][1000 genomes]
rs6600966	0.86[ASN][1000 genomes]
rs6600968	0.86[ASN][1000 genomes]
rs6600969	0.86[ASN][1000 genomes]
rs6600970	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6600971	0.85[ASN][1000 genomes]
rs6600972	0.86[ASN][1000 genomes]
rs6600973	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6600974	0.85[ASN][1000 genomes]
rs6600975	0.85[ASN][1000 genomes]
rs6600976	0.85[ASN][1000 genomes]
rs6600977	0.85[ASN][1000 genomes]
rs6600978	0.84[ASN][1000 genomes]
rs6600979	0.84[ASN][1000 genomes]
rs6861417	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6867380	0.81[ASN][1000 genomes]
rs6869597	0.82[ASN][1000 genomes]
rs6871640	0.84[ASN][1000 genomes]
rs6874069	0.82[ASN][1000 genomes]
rs6880309	0.86[ASN][1000 genomes]
rs6881187	0.90[ASN][1000 genomes]
rs6885551	0.81[ASN][1000 genomes]
rs6887669	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6888125	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6889638	0.81[ASN][1000 genomes]
rs6892280	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6895086	0.90[ASN][1000 genomes]
rs6897032	0.84[ASN][1000 genomes]
rs7446946	0.89[ASN][1000 genomes]
rs7446968	0.88[ASN][1000 genomes]
rs7447735	0.83[ASN][1000 genomes]
rs7701596	0.87[ASN][1000 genomes]
rs7703952	0.87[ASN][1000 genomes]
rs7709956	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7713731	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7716645	0.86[ASN][1000 genomes]
rs7716807	0.86[ASN][1000 genomes]
rs7718276	0.87[ASN][1000 genomes]
rs7720550	0.86[ASN][1000 genomes]
rs7722370	0.87[ASN][1000 genomes]
rs7726476	0.90[ASN][1000 genomes]
rs7735410	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462573	chr5:178180299-178241495	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv600452	chr5:178180299-178241495	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178226200-178230800	Weak transcription	K562	blood
2	chr5:178227200-178232400	Weak transcription	Right Atrium	heart
3	chr5:178228000-178228400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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