Variant report

Variant	rs6895086
Chromosome Location	chr5:178224236-178224237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178223973..178226497-chr5:178266303..178268866,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253725	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10036005	0.80[ASN][1000 genomes]
rs10059914	0.82[CHB][hapmap]
rs12515217	0.82[CHB][hapmap]
rs12515789	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12659899	0.91[CHB][hapmap]
rs4700796	0.80[ASN][1000 genomes]
rs4701078	0.86[ASN][1000 genomes]
rs6600958	0.90[ASN][1000 genomes]
rs6600959	0.80[ASN][1000 genomes]
rs6600964	0.91[CHB][hapmap]
rs6600965	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs6600976	0.84[CHB][hapmap]
rs6600977	0.85[CHB][hapmap]
rs6881187	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6892280	0.91[CHB][hapmap]
rs7446946	0.94[ASN][1000 genomes]
rs7446968	0.92[ASN][1000 genomes]
rs7701596	0.81[ASN][1000 genomes]
rs7703952	0.81[ASN][1000 genomes]
rs7716645	0.91[CHB][hapmap]
rs7718276	0.81[ASN][1000 genomes]
rs7722370	0.81[ASN][1000 genomes]
rs7726476	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462573	chr5:178180299-178241495	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv600452	chr5:178180299-178241495	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178221200-178228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:178224000-178224800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:178224000-178224800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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