Variant report

Variant	rs13188669
Chromosome Location	chr5:113053462-113053463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13178048	0.88[ASN][1000 genomes]
rs13183960	0.88[ASN][1000 genomes]
rs34354769	0.85[ASN][1000 genomes]
rs34636341	0.97[ASN][1000 genomes]
rs34846940	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894082	1.00[ASN][1000 genomes]
rs6594752	0.88[ASN][1000 genomes]
rs71577460	1.00[ASN][1000 genomes]
rs72807680	0.91[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13188669	CBS	trans	cerebellum	SCAN
rs13188669	AQPEP	cis	cerebellum	SCAN
rs13188669	TSSK1B	cis	cerebellum	SCAN
rs13188669	MAN2A1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113049200-113057400	Weak transcription	Fetal Kidney	kidney
2	chr5:113051000-113058200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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