Variant report

Variant	rs35894082
Chromosome Location	chr5:113022571-113022572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13178048	0.88[ASN][1000 genomes]
rs13183960	0.88[ASN][1000 genomes]
rs13188669	1.00[ASN][1000 genomes]
rs34077922	0.86[AFR][1000 genomes]
rs34354769	0.85[ASN][1000 genomes]
rs34636341	0.97[ASN][1000 genomes]
rs34846940	1.00[ASN][1000 genomes]
rs6594752	0.88[ASN][1000 genomes]
rs71577460	1.00[ASN][1000 genomes]
rs72807680	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113016600-113026000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:113018800-113027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:113019000-113028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:113021400-113023600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:113022400-113022600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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