Variant report
Variant | rs13189521 |
---|---|
Chromosome Location | chr5:61952522-61952523 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12654936 | 0.85[ASN][1000 genomes] |
rs12656974 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12657950 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13154549 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13180572 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13181266 | 0.90[EUR][1000 genomes] |
rs16890869 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs187624 | 0.83[ASN][1000 genomes] |
rs190445 | 0.83[ASN][1000 genomes] |
rs32047 | 0.93[AMR][1000 genomes] |
rs32053 | 0.83[ASN][1000 genomes] |
rs32148 | 0.83[ASN][1000 genomes] |
rs32149 | 0.83[ASN][1000 genomes] |
rs32151 | 0.83[ASN][1000 genomes] |
rs32152 | 0.83[ASN][1000 genomes] |
rs32153 | 0.83[ASN][1000 genomes] |
rs32156 | 0.83[ASN][1000 genomes] |
rs32159 | 0.83[ASN][1000 genomes] |
rs32162 | 0.83[ASN][1000 genomes] |
rs32165 | 0.83[ASN][1000 genomes] |
rs32167 | 0.83[ASN][1000 genomes] |
rs32169 | 0.83[ASN][1000 genomes] |
rs32170 | 0.83[ASN][1000 genomes] |
rs32173 | 0.83[ASN][1000 genomes] |
rs32176 | 0.80[ASN][1000 genomes] |
rs32177 | 0.93[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs35079068 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35183011 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs35807464 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs35961924 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs369624 | 0.83[ASN][1000 genomes] |
rs40404 | 0.93[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs40579 | 0.80[ASN][1000 genomes] |
rs6893243 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs814169 | 0.93[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1020255 | chr5:61451792-62031365 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | nsv1027539 | chr5:61457762-62000008 | Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
3 | nsv881732 | chr5:61811970-62063366 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
4 | esv2763458 | chr5:61852234-62157166 | ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1022817 | chr5:61853619-62149259 | Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
6 | nsv948334 | chr5:61891622-62197219 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
7 | nsv4858 | chr5:61922306-61966961 | Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNAmiRNA target site | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:61950400-61956600 | Weak transcription | HepG2 | liver |
2 | chr5:61952200-61957000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |