Variant report

Variant	rs13191391
Chromosome Location	chr6:4084967-4084968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:4084955-4085397	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:4079145..4082085-chr6:4082905..4085226,2	K562	blood:
2	chr6:4066739..4069378-chr6:4083684..4085264,2	MCF-7	breast:
3	chr6:4082801..4085618-chr6:4088964..4091515,2	MCF-7	breast:

Variant related genes	Relation type
C6orf201	TF binding region
ENSG00000185689	Chromatin interaction
ENSG00000145975	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13192123	1.00[AFR][1000 genomes]
rs13197516	1.00[AFR][1000 genomes]
rs35799489	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv462615	chr6:4052383-4096678	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv600860	chr6:4052383-4096678	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4079400-4092000	Weak transcription	Right Atrium	heart
2	chr6:4083800-4086000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:4084000-4087200	Weak transcription	Fetal Brain Male	brain
4	chr6:4084200-4085400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:4084400-4085200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:4084600-4085000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:4084600-4085000	Enhancers	Fetal Intestine Large	intestine
8	chr6:4084600-4085200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:4084600-4085200	Flanking Active TSS	Brain Germinal Matrix	brain
10	chr6:4084600-4085600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:4084600-4086000	Enhancers	Stomach Mucosa	stomach
12	chr6:4084800-4085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:4084800-4085000	Enhancers	Brain Angular Gyrus	brain
14	chr6:4084800-4085000	Bivalent Enhancer	HepG2	liver
15	chr6:4084800-4085200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:4084800-4085200	Enhancers	Brain Substantia Nigra	brain
17	chr6:4084800-4085200	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:4084800-4085200	Active TSS	Pancreas	Pancrea
19	chr6:4084800-4085200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:4084800-4085200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:4084800-4085400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:4084800-4085400	Flanking Active TSS	Liver	Liver
23	chr6:4084800-4085400	Active TSS	Fetal Kidney	kidney

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