Variant report

Variant	rs1319152
Chromosome Location	chr2:172103822-172103823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10803857	0.96[ASN][1000 genomes]
rs10930463	0.99[ASN][1000 genomes]
rs11690059	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12611999	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12613399	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1861770	0.96[ASN][1000 genomes]
rs2111461	0.98[ASN][1000 genomes]
rs2111462	0.96[ASN][1000 genomes]
rs2160701	0.98[ASN][1000 genomes]
rs4667681	0.88[ASN][1000 genomes]
rs4668379	0.87[EUR][1000 genomes]
rs6433286	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754377	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625231	0.88[ASN][1000 genomes]
rs7566096	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7598187	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9287944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs953505	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:172102200-172104000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:172102600-172104600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:172102800-172104000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:172102800-172104600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:172102800-172127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:172103000-172104400	Weak transcription	K562	blood
8	chr2:172103000-172104600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:172103000-172104600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:172103000-172105400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:172103200-172104400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:172103200-172104600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:172103200-172120000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:172103600-172104600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr2:172103600-172107000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr2:172103800-172104400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:172103800-172106800	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links