Variant report

Variant	rs4667681
Chromosome Location	chr2:172105380-172105381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172103436..172106886-chr2:172113198..172116997,4	K562	blood:
2	chr2:172104124..172106886-chr2:172115183..172116997,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10803857	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930463	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11685357	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12611999	0.97[ASN][1000 genomes]
rs1319152	0.88[ASN][1000 genomes]
rs1477181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1861770	0.84[ASN][1000 genomes]
rs2111461	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2111462	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2160701	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2193455	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6433286	0.88[ASN][1000 genomes]
rs6754377	0.88[ASN][1000 genomes]
rs72625231	0.99[ASN][1000 genomes]
rs7583118	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7598187	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7609530	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9287944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs953505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172102800-172127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172103000-172105400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:172103200-172120000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:172103600-172107000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:172103800-172106800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:172104000-172107200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr2:172104200-172105600	Enhancers	Primary B cells from cord blood	blood
8	chr2:172104200-172105600	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:172104400-172105400	Enhancers	K562	blood
10	chr2:172104400-172106400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr2:172104400-172106600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:172104600-172105400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:172104600-172105600	Enhancers	Thymus	Thymus
14	chr2:172104600-172105600	Flanking Active TSS	Dnd41	blood
15	chr2:172104600-172105800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:172104600-172105800	Enhancers	Primary hematopoietic stem cells	blood
17	chr2:172104600-172106000	Enhancers	Fetal Thymus	thymus
18	chr2:172104800-172105400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:172105000-172105600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:172105000-172106600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr2:172105200-172105600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:172105200-172105600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:172105200-172106400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:172105200-172106600	Enhancers	Primary T cells from cord blood	blood
25	chr2:172105200-172106600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr2:172105200-172106800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr2:172105200-172106800	Enhancers	GM12878-XiMat	blood
28	chr2:172105200-172107000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:172105200-172107000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr2:172105200-172107200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links