Variant report

Variant	rs7583118
Chromosome Location	chr2:172100298-172100299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10803857	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10930463	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11685357	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1477181	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2111461	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2111462	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2160701	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2193455	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667681	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7598187	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7609530	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9287944	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs953505	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172094200-172100800	Weak transcription	Placenta	Placenta
2	chr2:172095800-172100600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:172095800-172100800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:172096800-172100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:172098800-172101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:172098800-172101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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