Variant report

Variant	rs13194956
Chromosome Location	chr6:145015902-145015903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11155372	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11970600	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1590054	0.80[AFR][1000 genomes]
rs4896737	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902144	0.84[ASN][1000 genomes]
rs6902284	0.84[ASN][1000 genomes]
rs6931305	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768069	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321987	0.85[ASN][1000 genomes]
rs9403579	0.83[AMR][1000 genomes]
rs9497053	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
3	chr6:144996600-145018400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:144997000-145017600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:144997200-145018000	Weak transcription	NHLF	lung
7	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:145000800-145025400	Weak transcription	HSMM	muscle
9	chr6:145002800-145018000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
11	chr6:145005000-145017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
13	chr6:145005800-145017400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:145008400-145021200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:145009000-145029600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
17	chr6:145009200-145016600	Weak transcription	Liver	Liver
18	chr6:145009200-145018000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:145010400-145029600	Weak transcription	Aorta	Aorta
20	chr6:145010600-145047000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:145010800-145031000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:145010800-145031400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:145011000-145027800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:145011000-145052600	Weak transcription	Ovary	ovary
25	chr6:145011200-145029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:145011200-145035200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:145011600-145016600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:145011600-145021200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:145011600-145023000	Weak transcription	Fetal Heart	heart
30	chr6:145011800-145031000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
32	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
34	chr6:145012000-145020600	Weak transcription	Dnd41	blood
35	chr6:145012000-145021400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:145012000-145026200	Weak transcription	Left Ventricle	heart
37	chr6:145012000-145029400	Weak transcription	Lung	lung
38	chr6:145012000-145036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:145012000-145039200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:145012000-145047000	Weak transcription	Gastric	stomach
41	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
42	chr6:145012200-145016600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:145012200-145017200	Weak transcription	HepG2	liver
44	chr6:145012400-145021200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
46	chr6:145012600-145017200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:145012600-145017400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:145012800-145023200	Weak transcription	Fetal Thymus	thymus
49	chr6:145013400-145017600	Weak transcription	Primary T cells from cord blood	blood
50	chr6:145013400-145017800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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