Variant report

Variant	rs4896737
Chromosome Location	chr6:145021549-145021550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155372	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970600	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194956	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1590054	0.88[ASW][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs6570640	0.81[AFR][1000 genomes]
rs6902144	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6902284	0.85[ASN][1000 genomes]
rs6931305	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7768069	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9321987	0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9376842	0.81[AFR][1000 genomes]
rs9390197	0.88[ASW][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs9403587	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs9497053	0.94[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
3	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:145000800-145025400	Weak transcription	HSMM	muscle
6	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
7	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
8	chr6:145009000-145029600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
10	chr6:145010400-145029600	Weak transcription	Aorta	Aorta
11	chr6:145010600-145047000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:145010800-145031000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:145010800-145031400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:145011000-145027800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:145011000-145052600	Weak transcription	Ovary	ovary
16	chr6:145011200-145029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:145011200-145035200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:145011600-145023000	Weak transcription	Fetal Heart	heart
19	chr6:145011800-145031000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
21	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
23	chr6:145012000-145026200	Weak transcription	Left Ventricle	heart
24	chr6:145012000-145029400	Weak transcription	Lung	lung
25	chr6:145012000-145036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:145012000-145039200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:145012000-145047000	Weak transcription	Gastric	stomach
28	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
29	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
30	chr6:145012800-145023200	Weak transcription	Fetal Thymus	thymus
31	chr6:145013400-145022400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:145013600-145023000	Weak transcription	Adipose Nuclei	Adipose
33	chr6:145013800-145031200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:145014200-145033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:145014200-145047000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:145017600-145029800	Weak transcription	GM12878-XiMat	blood
37	chr6:145018200-145031000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:145018200-145047200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:145018200-145052400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:145018400-145026600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:145018400-145031200	Weak transcription	NHLF	lung
42	chr6:145018400-145069000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:145018600-145026200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:145018600-145031000	Weak transcription	NHDF-Ad	bronchial
45	chr6:145018800-145022400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:145018800-145023200	Weak transcription	Primary T cells from cord blood	blood
47	chr6:145018800-145023400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:145018800-145029400	Weak transcription	Fetal Intestine Large	intestine
49	chr6:145018800-145033400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:145018800-145041200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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