Variant report

Variant	rs13196232
Chromosome Location	chr6:5608482-5608483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5598894..5600945-chr6:5606990..5609322,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12193006	1.00[ASN][1000 genomes]
rs12195596	1.00[ASN][1000 genomes]
rs12197357	1.00[ASN][1000 genomes]
rs12199468	1.00[ASN][1000 genomes]
rs12203435	1.00[ASN][1000 genomes]
rs12203726	1.00[ASN][1000 genomes]
rs12204218	1.00[ASN][1000 genomes]
rs12206230	1.00[ASN][1000 genomes]
rs12209234	1.00[ASN][1000 genomes]
rs12213022	1.00[ASN][1000 genomes]
rs13202324	1.00[ASN][1000 genomes]
rs13209186	1.00[ASN][1000 genomes]
rs17274714	1.00[ASN][1000 genomes]
rs34234636	1.00[ASN][1000 genomes]
rs34669476	1.00[ASN][1000 genomes]
rs34910355	1.00[ASN][1000 genomes]
rs35251058	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35458062	1.00[ASN][1000 genomes]
rs35565840	1.00[ASN][1000 genomes]
rs35940054	1.00[ASN][1000 genomes]
rs62387165	1.00[ASN][1000 genomes]
rs9504426	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1016905	chr6:5566364-5639167	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1015549	chr6:5593965-5630468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv969345	chr6:5608180-5611406	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5577400-5639800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:5581000-5614200	Weak transcription	Lung	lung
3	chr6:5581000-5640400	Weak transcription	Gastric	stomach
4	chr6:5587200-5619400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:5590800-5622000	Weak transcription	Right Atrium	heart
6	chr6:5591200-5619000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:5591600-5626400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:5592200-5619200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:5593400-5621000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:5603800-5614000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:5604800-5611000	Weak transcription	Pancreas	Pancrea
12	chr6:5605600-5618800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:5605600-5619200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:5605800-5617200	Weak transcription	Left Ventricle	heart
15	chr6:5607200-5614200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links