Variant report

Variant	rs34910355
Chromosome Location	chr6:5510980-5510981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5499395..5501300-chr6:5509807..5511478,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12193006	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12195596	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12197357	1.00[ASN][1000 genomes]
rs12199468	1.00[ASN][1000 genomes]
rs12203435	1.00[ASN][1000 genomes]
rs12203726	1.00[ASN][1000 genomes]
rs12204218	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12204655	1.00[ASN][1000 genomes]
rs12206230	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12209234	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12213022	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13196232	1.00[ASN][1000 genomes]
rs13202324	1.00[ASN][1000 genomes]
rs13209186	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17274714	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34234636	1.00[ASN][1000 genomes]
rs34669476	1.00[ASN][1000 genomes]
rs35251058	1.00[ASN][1000 genomes]
rs35458062	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35565840	1.00[ASN][1000 genomes]
rs35940054	1.00[ASN][1000 genomes]
rs62387165	1.00[ASN][1000 genomes]
rs9504426	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1034607	chr6:5311590-5573514	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538120	chr6:5311590-5573514	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1023027	chr6:5377308-5556749	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538121	chr6:5377308-5556749	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv600886	chr6:5426265-5511614	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1017506	chr6:5443538-5551125	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5466400-5518200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:5472400-5511600	Weak transcription	Fetal Stomach	stomach
3	chr6:5488600-5521600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:5498800-5513000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:5500200-5511000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:5500400-5511800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:5500400-5525000	Weak transcription	Spleen	Spleen
8	chr6:5500800-5511600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:5501000-5511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:5501000-5550600	Weak transcription	Pancreas	Pancrea
11	chr6:5501200-5511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:5501400-5513400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:5502400-5511200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:5502400-5511200	Weak transcription	Gastric	stomach
15	chr6:5506600-5512000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:5507600-5511600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:5507600-5511600	Weak transcription	Osteobl	bone
18	chr6:5507600-5512400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:5508000-5511800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:5508000-5547400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:5508200-5511000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:5508200-5511200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:5508200-5512000	Weak transcription	Thymus	Thymus
24	chr6:5508200-5512400	Weak transcription	Fetal Brain Male	brain
25	chr6:5508200-5516800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:5508200-5519400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:5508400-5516400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:5508600-5517200	Weak transcription	Primary T cells from cord blood	blood
29	chr6:5508800-5511000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:5509000-5513800	Weak transcription	GM12878-XiMat	blood
31	chr6:5509000-5515000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:5509000-5517200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:5509000-5519400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:5509000-5521000	Weak transcription	Fetal Thymus	thymus
35	chr6:5509000-5524400	Weak transcription	Primary B cells from cord blood	blood
36	chr6:5509200-5511200	Strong transcription	Fetal Intestine Small	intestine
37	chr6:5509600-5527400	Weak transcription	Lung	lung
38	chr6:5510000-5513200	Weak transcription	Left Ventricle	heart
39	chr6:5510200-5511200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:5510400-5511400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:5510400-5512800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr6:5510600-5511200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:5510600-5511400	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:5510600-5511400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:5510600-5511400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr6:5510600-5511400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr6:5510600-5511400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:5510600-5511400	Strong transcription	Aorta	Aorta
49	chr6:5510600-5512000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:5510600-5512000	Enhancers	HUES6 Cell Line	embryonic stem cell

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