Variant report

Variant	rs13198067
Chromosome Location	chr6:13768764-13768765
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13209220	1.00[AFR][1000 genomes]
rs13215835	1.00[AFR][1000 genomes]
rs34778758	1.00[AFR][1000 genomes]
rs56040637	1.00[AFR][1000 genomes]
rs62387431	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13765800-13768800	Enhancers	Fetal Thymus	thymus
2	chr6:13766800-13772800	Weak transcription	Spleen	Spleen
3	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:13767200-13768800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:13767600-13768800	Enhancers	Lung	lung
6	chr6:13768000-13768800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:13768000-13768800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:13768000-13769600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:13768200-13768800	Enhancers	Fetal Heart	heart
10	chr6:13768200-13768800	Enhancers	Fetal Muscle Leg	muscle
11	chr6:13768200-13768800	Enhancers	Right Atrium	heart
12	chr6:13768200-13768800	Enhancers	Right Ventricle	heart
13	chr6:13768200-13768800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:13768200-13768800	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:13768200-13768800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:13768200-13769400	Weak transcription	Placenta	Placenta
17	chr6:13768200-13769800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:13768200-13771600	Weak transcription	NHLF	lung
19	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
20	chr6:13768400-13769400	Weak transcription	Fetal Stomach	stomach
21	chr6:13768400-13769400	Weak transcription	K562	blood
22	chr6:13768600-13768800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:13768600-13768800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:13768600-13768800	Active TSS	Skeletal Muscle Male	skeletal muscle

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