Variant report

Variant	rs13215835
Chromosome Location	chr6:13708149-13708150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13693992..13697221-chr6:13708052..13711450,4	MCF-7	breast:
2	chr6:13678292..13681247-chr6:13708035..13710228,2	MCF-7	breast:
3	chr6:13664552..13667065-chr6:13707492..13709174,2	MCF-7	breast:
4	chr6:13612229..13617961-chr6:13707977..13713490,13	K562	blood:
5	chr6:13658437..13687167-chr6:13707669..13717356,51	K562	blood:
6	chr6:13707885..13710532-chr6:13710566..13713183,2	MCF-7	breast:
7	chr6:13677099..13683232-chr6:13708060..13717356,16	K562	blood:
8	chr6:13700037..13701941-chr6:13706624..13709123,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261071	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000252966	Chromatin interaction
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13198067	1.00[AFR][1000 genomes]
rs13209220	1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34778758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56040637	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56167238	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62387431	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883451	chr6:13704341-13728670	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13679000-13708400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:13681000-13708600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:13686400-13709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:13690600-13708400	Weak transcription	Aorta	Aorta
5	chr6:13692200-13708400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:13692800-13708400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:13695000-13708200	Weak transcription	Fetal Brain Female	brain
8	chr6:13696200-13708200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:13696200-13708200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:13696200-13708200	Weak transcription	Fetal Brain Male	brain
11	chr6:13696200-13708200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:13696600-13708400	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:13697200-13708400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:13697200-13708400	Weak transcription	NH-A	brain
15	chr6:13698600-13708200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:13698600-13708400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:13699200-13708200	Weak transcription	HSMM	muscle
18	chr6:13699200-13708400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:13700600-13708400	Weak transcription	Placenta	Placenta
20	chr6:13700800-13708400	Weak transcription	Thymus	Thymus
21	chr6:13700800-13708600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:13700800-13710400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:13701000-13708600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:13701400-13708200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:13703400-13708400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:13703600-13708200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:13703600-13708200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:13703600-13708200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:13703600-13708200	Weak transcription	NHEK	skin
30	chr6:13703600-13708400	Weak transcription	Gastric	stomach
31	chr6:13703600-13708400	Weak transcription	Lung	lung
32	chr6:13703800-13708200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:13703800-13708400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:13703800-13708400	Weak transcription	Right Ventricle	heart
35	chr6:13703800-13710800	Weak transcription	Spleen	Spleen
36	chr6:13704000-13708200	Weak transcription	Liver	Liver
37	chr6:13704000-13708200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:13704000-13708400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:13704000-13708400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:13704200-13708400	Weak transcription	Osteobl	bone
41	chr6:13704200-13709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:13704400-13708200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:13704400-13708200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:13704600-13708200	Weak transcription	Brain Anterior Caudate	brain
45	chr6:13704600-13708400	Weak transcription	Right Atrium	heart
46	chr6:13704800-13708200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:13704800-13708200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:13704800-13708200	Weak transcription	Small Intestine	intestine
49	chr6:13704800-13709000	Weak transcription	Psoas Muscle	Psoas
50	chr6:13705000-13708200	Weak transcription	Primary B cells from peripheral blood	blood

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