Variant report

Variant	rs13199476
Chromosome Location	chr6:117593257-117593258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13194610	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201929	0.86[AFR][1000 genomes]
rs13208901	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210974	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210975	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210976	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391390	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34228274	0.86[AFR][1000 genomes]
rs34262053	0.86[AFR][1000 genomes]
rs34523935	0.86[AFR][1000 genomes]
rs35421344	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35829151	0.86[AFR][1000 genomes]
rs35998625	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3822947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57100713	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570842	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387459	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387461	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387462	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830785	chr6:117448943-117627275	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2757190	chr6:117464048-117609529	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117591000-117593400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:117592400-117593400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr6:117592400-117593400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:117592400-117593400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
5	chr6:117592400-117593600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
6	chr6:117592800-117593600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr6:117592800-117593800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr6:117593000-117593800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr6:117593200-117593400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr6:117593200-117593400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:117593200-117593400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr6:117593200-117593400	Active TSS	HSMMtube	muscle
13	chr6:117593200-117593600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr6:117593200-117593800	Flanking Active TSS	HSMM	muscle
15	chr6:117593200-117594200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr6:117593200-117594200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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