Variant report

Variant	rs71570843
Chromosome Location	chr6:117592548-117592549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13194610	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199476	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208901	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210974	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210975	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210976	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391390	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35421344	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35998625	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3822947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57100713	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570842	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387459	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387461	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387462	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830785	chr6:117448943-117627275	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2757190	chr6:117464048-117609529	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117591000-117592800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr6:117591000-117593400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:117591800-117593200	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr6:117591800-117593200	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr6:117592400-117593200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr6:117592400-117593200	Enhancers	HSMM	muscle
7	chr6:117592400-117593200	Weak transcription	HSMMtube	muscle
8	chr6:117592400-117593400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr6:117592400-117593400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:117592400-117593400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
11	chr6:117592400-117593600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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