Variant report

Variant	rs1320055
Chromosome Location	chr11:102481503-102481504
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr11:102481489-102482381	GM12878	blood:	n/a	chr11:102482165-102482177
2	MTA3	chr11:102481446-102482488	GM12878	blood:	n/a	n/a
3	PML	chr11:102481378-102482542	GM12878	blood:	n/a	n/a
4	NFIC	chr11:102481220-102482802	GM12878	blood:	n/a	chr11:102482356-102482372
5	MAX	chr11:102481293-102481636	GM12878	blood:	n/a	chr11:102481296-102481312
6	ZNF384	chr11:102481306-102481638	GM12878	blood:	n/a	n/a
7	RUNX3	chr11:102481449-102482548	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MMP20	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1317947	0.84[ASN][1000 genomes]
rs1631411	0.84[ASN][1000 genomes]
rs1711410	0.86[ASN][1000 genomes]
rs1711411	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1711412	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1711413	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1711414	0.82[ASN][1000 genomes]
rs1711416	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1711417	0.86[ASN][1000 genomes]
rs1711418	0.87[ASN][1000 genomes]
rs1711420	0.85[ASN][1000 genomes]
rs1711421	0.85[ASN][1000 genomes]
rs1711422	0.85[ASN][1000 genomes]
rs1711423	0.85[ASN][1000 genomes]
rs1711425	0.85[ASN][1000 genomes]
rs1711426	0.85[ASN][1000 genomes]
rs1711427	0.84[ASN][1000 genomes]
rs1711429	0.84[ASN][1000 genomes]
rs1784418	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1784421	0.85[ASN][1000 genomes]
rs1784422	0.85[ASN][1000 genomes]
rs1784423	0.84[ASN][1000 genomes]
rs1784424	0.84[ASN][1000 genomes]
rs1784425	0.84[ASN][1000 genomes]
rs1784426	0.84[ASN][1000 genomes]
rs1784427	0.84[ASN][1000 genomes]
rs2509020	0.83[ASN][1000 genomes]
rs2846366	0.84[ASN][1000 genomes]
rs4285839	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1792869	chr11:102477138-102483249	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102475200-102486200	Weak transcription	HSMMtube	muscle
3	chr11:102475400-102483600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102475800-102484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:102476000-102484600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:102476000-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:102476200-102484000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:102476200-102484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:102476600-102486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:102478600-102484000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:102478600-102486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:102480400-102481800	Enhancers	GM12878-XiMat	blood
13	chr11:102480400-102482400	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:102480600-102481600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:102480600-102482000	Enhancers	Fetal Intestine Large	intestine
16	chr11:102480800-102481600	Weak transcription	Fetal Intestine Small	intestine
17	chr11:102480800-102481800	Enhancers	Duodenum Mucosa	Duodenum
18	chr11:102481000-102482400	Enhancers	A549	lung
19	chr11:102481400-102481800	Enhancers	Primary B cells from cord blood	blood

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