Variant report

Variant	rs1711420
Chromosome Location	chr11:102479549-102479550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:102479463-102479805	MCF10A-Er-Src	breast:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479636-102479647 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
2	FOSL2	chr11:102479400-102479850	SK-N-SH	brain:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
3	JUND	chr11:102479262-102480029	SK-N-SH	brain:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479647 chr11:102479636-102479648 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
4	JUND	chr11:102479491-102479798	HepG2	liver:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479647 chr11:102479636-102479648 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
5	FOSL1	chr11:102479127-102479978	HCT-116	colon:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
6	FOSL2	chr11:102479381-102479858	A549	lung:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
7	FOS	chr11:102479509-102479709	HUVEC	blood vessel:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479636-102479647 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
8	FOS	chr11:102479470-102479788	MCF10A-Er-Src	breast:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479636-102479647 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
9	NFIC	chr11:102479341-102480011	SK-N-SH	brain:	n/a	chr11:102479615-102479632
10	EP300	chr11:102479525-102479771	SK-N-SH_RA	brain:	n/a	chr11:102479637-102479646
11	FOS	chr11:102479470-102479808	MCF10A-Er-Src	breast:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479636-102479647 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
12	FOS	chr11:102479453-102479808	MCF10A-Er-Src	breast:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479648 chr11:102479636-102479647 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646
13	JUND	chr11:102479376-102479856	SK-N-SH	brain:	n/a	chr11:102479634-102479645 chr11:102479638-102479647 chr11:102479636-102479647 chr11:102479636-102479648 chr11:102479637-102479646 chr11:102479637-102479647 chr11:102479631-102479643 chr11:102479639-102479646

Variant related genes	Relation type
MMP20	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1317947	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1320055	0.85[ASN][1000 genomes]
rs1631411	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711403	0.81[EUR][1000 genomes]
rs1711409	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1711410	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711411	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1711412	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711413	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711414	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711416	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711417	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711418	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1711421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711422	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711427	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711429	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711437	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1711439	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784417	0.85[EUR][1000 genomes]
rs1784418	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1784421	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784422	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784423	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784424	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784425	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784426	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784427	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784428	0.85[ASN][1000 genomes]
rs1784451	0.80[EUR][1000 genomes]
rs2509020	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2846366	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2846369	0.80[EUR][1000 genomes]
rs4285839	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs751547	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1792869	chr11:102477138-102483249	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv33374	chr11:102477417-102479840	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102475200-102486200	Weak transcription	HSMMtube	muscle
3	chr11:102475400-102483600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102475800-102484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:102476000-102484600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:102476000-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:102476200-102484000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:102476200-102484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:102476600-102486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:102478000-102480600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:102478600-102484000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:102478600-102486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:102479400-102479600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:102479400-102479800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:102479400-102480200	Enhancers	A549	lung

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