Variant report

Variant	rs13200953
Chromosome Location	chr6:143954419-143954420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13192982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195247	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13210200	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13214849	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1856391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34154070	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34549423	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34656252	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35907844	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36155996	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924970	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55820800	0.81[EUR][1000 genomes]
rs71564441	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71564444	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71564446	1.00[ASN][1000 genomes]
rs9390114	1.00[ASN][1000 genomes]
rs9496711	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv517253	chr6:143953672-143975157	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143939000-143955800	Weak transcription	Stomach Mucosa	stomach
3	chr6:143942200-143955600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143947400-143955000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:143947400-143955200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:143947800-143955000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:143949800-143955000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:143951200-143955600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:143951200-143960200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:143954400-143958200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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