Variant report

Variant	rs55820800
Chromosome Location	chr6:143866670-143866671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143865983..143871138-chr6:143872927..143875725,7	K562	blood:
2	chr6:143858472..143863143-chr6:143863461..143868967,5	K562	blood:
3	chr6:143866196..143871091-chr6:143873413..143876633,4	K562	blood:
4	chr6:143831309..143833677-chr6:143865327..143867194,2	MCF-7	breast:
5	chr6:143862944..143867342-chr6:143867503..143870947,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction

rs_ID	r²[population]
rs13192982	0.81[EUR][1000 genomes]
rs13200953	0.81[EUR][1000 genomes]
rs1856391	0.81[EUR][1000 genomes]
rs34656252	0.81[EUR][1000 genomes]
rs36155996	0.83[EUR][1000 genomes]
rs71564441	0.83[EUR][1000 genomes]
rs9496711	0.83[EUR][1000 genomes]

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859400-143871200	Weak transcription	Pancreas	Pancrea
2	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:143859600-143868600	Weak transcription	Primary B cells from cord blood	blood
6	chr6:143861000-143866800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:143861000-143866800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:143861400-143866800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:143861800-143870600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:143862200-143866800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:143862800-143867400	Enhancers	Stomach Mucosa	stomach
12	chr6:143863200-143869000	Enhancers	Fetal Intestine Large	intestine
13	chr6:143863200-143870200	Weak transcription	Small Intestine	intestine
14	chr6:143863400-143870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:143863800-143870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:143864200-143866800	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:143864600-143867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143864600-143867200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:143864800-143867800	Weak transcription	Gastric	stomach
20	chr6:143865000-143866800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:143865000-143867000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr6:143865000-143867400	Enhancers	GM12878-XiMat	blood
23	chr6:143865000-143875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:143865600-143874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:143865800-143867000	Enhancers	Primary T cells from cord blood	blood
27	chr6:143865800-143867600	Enhancers	NHEK	skin
28	chr6:143865800-143876000	Weak transcription	Fetal Heart	heart
29	chr6:143866200-143867200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:143866200-143867600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:143866200-143870000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:143866400-143866800	Enhancers	Esophagus	oesophagus
33	chr6:143866400-143866800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:143866400-143867000	Enhancers	HMEC	breast
35	chr6:143866400-143867200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:143866400-143867400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr6:143866400-143867600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:143866400-143867600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr6:143866400-143867600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr6:143866400-143867600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr6:143866400-143867600	Enhancers	K562	blood
42	chr6:143866400-143868000	Enhancers	HepG2	liver
43	chr6:143866600-143867000	Enhancers	Fetal Intestine Small	intestine
44	chr6:143866600-143867200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr6:143866600-143867400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:143866600-143867400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr6:143866600-143867600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:143866600-143867600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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