Variant report

Variant	rs13202734
Chromosome Location	chr6:69481461-69481462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1033521	0.81[CEU][hapmap]
rs11756306	0.80[CEU][hapmap]
rs2585624	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69471600-69481600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:69478000-69485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69480000-69481800	Enhancers	Brain Substantia Nigra	brain
5	chr6:69480000-69482600	Enhancers	Brain Angular Gyrus	brain
6	chr6:69480400-69481600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69480400-69484800	Weak transcription	Fetal Lung	lung
8	chr6:69481200-69483800	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:69481400-69481600	Enhancers	K562	blood
10	chr6:69481400-69482000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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