Variant report
| Variant | rs1033521 |
|---|---|
| Chromosome Location | chr6:69504861-69504862 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:69504737..69507023-chr6:69507308..69508878,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10484792 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs11756306 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11962532 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13190871 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs13192244 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13199686 | 0.94[EUR][1000 genomes] |
| rs13200410 | 0.94[EUR][1000 genomes] |
| rs13202734 | 0.81[CEU][hapmap] |
| rs13203525 | 0.91[CEU][hapmap] |
| rs13205909 | 0.83[EUR][1000 genomes] |
| rs13220538 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs1403920 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2585602 | 0.91[CEU][hapmap] |
| rs2585617 | 0.91[CEU][hapmap] |
| rs2746138 | 0.91[CEU][hapmap] |
| rs2802682 | 0.91[CEU][hapmap] |
| rs36099840 | 1.00[EUR][1000 genomes] |
| rs62416548 | 0.94[EUR][1000 genomes] |
| rs9294809 | 1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9446056 | 1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9454617 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9454623 | 1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886130 | chr6:68950298-69531957 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv886131 | chr6:69480628-69545903 | Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv886132 | chr6:69487204-69610281 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1017659 | chr6:69489481-69520127 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69489600-69507000 | Weak transcription | Fetal Lung | lung |
| 2 | chr6:69504800-69505400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
