Variant report

Variant	rs36099840
Chromosome Location	chr6:69500027-69500028
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033521	1.00[EUR][1000 genomes]
rs10484792	0.83[EUR][1000 genomes]
rs11756306	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11962532	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13190871	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13192244	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13199686	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13200410	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13205909	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13220538	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1403920	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416548	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9294809	0.96[EUR][1000 genomes]
rs9446056	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454617	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454623	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69489600-69507000	Weak transcription	Fetal Lung	lung
2	chr6:69499800-69500200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:69499800-69500200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
4	chr6:69499800-69500800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:69500000-69500200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:69500000-69500200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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