Variant report

Variant	rs10484792
Chromosome Location	chr6:69467243-69467244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69460973..69463599-chr6:69463618..69467509,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1033521	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10455673	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11756306	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11962532	0.81[EUR][1000 genomes]
rs12212114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13190871	1.00[CEU][hapmap]
rs13192244	0.81[EUR][1000 genomes]
rs13199686	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13200410	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13203525	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205909	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219669	1.00[YRI][hapmap]
rs13220538	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1403920	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17257244	1.00[ASN][1000 genomes]
rs2585602	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585617	0.91[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2746136	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2746138	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802678	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802681	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802682	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36099840	0.83[EUR][1000 genomes]
rs62416548	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72897104	1.00[ASN][1000 genomes]
rs9294809	1.00[CEU][hapmap]
rs9446056	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9454617	0.83[EUR][1000 genomes]
rs9454623	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69463400-69470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69464000-69469000	Enhancers	Brain Substantia Nigra	brain
3	chr6:69464600-69468000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:69464800-69468400	Enhancers	Fetal Lung	lung
5	chr6:69465200-69468200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:69465400-69468000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:69465400-69468600	Enhancers	Brain Angular Gyrus	brain
8	chr6:69465600-69467400	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:69465600-69467400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:69466000-69467400	Enhancers	Fetal Brain Female	brain
11	chr6:69466800-69467400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:69467000-69467800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:69467000-69468200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:69467000-69470000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:69467200-69467400	Enhancers	Fetal Stomach	stomach
16	chr6:69467200-69467400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:69467200-69468000	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:69467200-69468600	Weak transcription	K562	blood
19	chr6:69467200-69470800	Weak transcription	Fetal Brain Male	brain
20	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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