Variant report

Variant	rs13203525
Chromosome Location	chr6:69448447-69448448
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69445033..69447210-chr6:69448039..69450265,2	K562	blood:
2	chr6:69442531..69444196-chr6:69448116..69450780,2	K562	blood:
3	chr6:69444346..69447984-chr6:69448039..69451471,5	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1033521	0.91[CEU][hapmap]
rs10455673	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10484792	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756306	0.90[CEU][hapmap]
rs12212114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13190871	0.92[CEU][hapmap]
rs13199686	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13200410	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13205909	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220538	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1403920	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs17257244	1.00[ASN][1000 genomes]
rs2585602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585617	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2746136	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2746138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802678	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802681	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416548	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72897104	1.00[ASN][1000 genomes]
rs9294809	0.92[CEU][hapmap]
rs9446056	0.91[CEU][hapmap]
rs9454623	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69447600-69448600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:69447600-69448600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:69447800-69448600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:69448000-69449000	Enhancers	Brain Angular Gyrus	brain
9	chr6:69448400-69449200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:69448400-69450200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:69448400-69450400	Enhancers	K562	blood
12	chr6:69448400-69452200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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