Variant report

Variant	rs2585602
Chromosome Location	chr6:69411474-69411475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69411088..69412917-chr6:69473045..69475700,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1033521	0.91[CEU][hapmap]
rs10455673	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10484792	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756306	1.00[ASW][hapmap];0.90[CEU][hapmap];0.92[GIH][hapmap];0.84[LWK][hapmap];0.86[MEX][hapmap]
rs12212114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13190871	0.91[CEU][hapmap]
rs13199686	0.85[AMR][1000 genomes]
rs13200410	0.88[AMR][1000 genomes]
rs13203525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205909	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220538	0.91[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs1403920	0.91[CEU][hapmap]
rs17257244	1.00[ASN][1000 genomes]
rs2585617	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2746136	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2746138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802678	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802679	1.00[CHB][hapmap];0.84[LWK][hapmap];1.00[ASN][1000 genomes]
rs2802681	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416548	0.88[AMR][1000 genomes]
rs72897104	1.00[ASN][1000 genomes]
rs9294809	0.91[CEU][hapmap]
rs9446056	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9454623	0.91[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69407400-69413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69407400-69413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69411200-69411800	Enhancers	Brain Angular Gyrus	brain
8	chr6:69411200-69412200	Enhancers	Brain Substantia Nigra	brain
9	chr6:69411400-69414000	Weak transcription	Brain Anterior Caudate	brain

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