Variant report

Variant	rs12212114
Chromosome Location	chr6:69442182-69442183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10455673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484792	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13203525	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13205909	1.00[ASN][1000 genomes]
rs17257244	1.00[ASN][1000 genomes]
rs2585602	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2585617	1.00[ASN][1000 genomes]
rs2746136	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746138	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802678	1.00[ASN][1000 genomes]
rs2802679	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802681	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72897104	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69436600-69444200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69439400-69442400	Weak transcription	K562	blood
3	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69441000-69444200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69441000-69445600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:69441200-69448000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:69442000-69442800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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