Variant report

Variant	rs2802682
Chromosome Location	chr6:69400582-69400583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69362720..69364963-chr6:69399822..69401400,2	K562	blood:
2	chr6:69398238..69400997-chr6:69423873..69426595,2	K562	blood:
3	chr6:69397594..69401591-chr6:69402170..69406294,3	K562	blood:
4	chr6:69399688..69402508-chr6:69408019..69410089,2	K562	blood:
5	chr6:69399809..69401625-chr6:69437402..69440315,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1033521	0.91[CEU][hapmap]
rs10455673	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10484792	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756306	0.90[CEU][hapmap]
rs12212114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13190871	0.92[CEU][hapmap]
rs13200410	0.82[AMR][1000 genomes]
rs13203525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205909	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220538	0.92[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1403920	0.92[CEU][hapmap]
rs17257244	1.00[ASN][1000 genomes]
rs2585602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585617	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2746136	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2746138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2802681	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs62416548	0.82[AMR][1000 genomes]
rs72897104	1.00[ASN][1000 genomes]
rs9294809	0.92[CEU][hapmap]
rs9446056	0.91[CEU][hapmap]
rs9454623	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69398800-69401600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:69399400-69403800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:69399600-69401600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69399800-69400600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:69399800-69401200	Enhancers	Brain Angular Gyrus	brain
6	chr6:69399800-69401400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:69399800-69401400	Enhancers	Brain Anterior Caudate	brain
8	chr6:69399800-69401400	Enhancers	Brain Hippocampus Middle	brain
9	chr6:69400000-69401200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:69400200-69405600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:69400400-69401000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:69400400-69401200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:69400400-69401400	Enhancers	K562	blood
15	chr6:69400400-69405400	Weak transcription	Fetal Lung	lung
16	chr6:69400400-69407000	Weak transcription	Brain Substantia Nigra	brain

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